Following exception made me some problem.
at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690)
at java.lang.Thread.run(Thread.java:662)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: No operations allowed after connection closed.Connection was implicitly closed due to underlying exception/err
** BEGIN NESTED EXCEPTION **
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException
MESSAGE: Communications link failure
Last packet sent to the server was 18788 ms ago.
STACKTRACE:
com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
Last packet sent to the server was 18788 ms ago.
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:2985)
at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:2871)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3414)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1936)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2060)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2542)
at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1734)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:1885)
at org.hibernate.jdbc.AbstractBatcher.getResultSet(AbstractBatcher.java:208)
at org.hibernate.loader.Loader.getResultSet(Loader.java:1953)
at org.hibernate.loader.Loader.doQuery(Loader.java:802)
at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:274)
My environment was MySQL 5.0.77, Java 1.6.0_24-b07, Apache Tomcat 6.0.32, Hibernate 3.6.0.Final.
This exception never occurs at development or continues integration environment. This problem appears just in production after one day of running without application restart. After some time of testing JDBC connection handling, TCP/IP connection to MySQL database I found that problem is caused by incorrect hibernate dialect configuration
<property name="hibernate.dialect">org.hibernate.dialect.MySQL5InnoDBDialect</property>
After correcting to:
<property name="hibernate.dialect">org.hibernate.dialect.MySQLInnoDBDialect</property>
everything works fine.